rs30557305 SNP Detail

Summary

• ID
  rs30557305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56882407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCAGGC AATCAATCAT
  GAACACACAC CTGTGTCGCT ATAGGCAATT ACATATATAT ATGCTTACAT TAGAGTGCTT
  GAAAAATATA TTCCTAAGAC TGCTTGCCTC GTCAGAGGGC TCAACAGATA TAAAGCCTGA
  CAACACAAGT TCCATCCCTG AGACTCAAAA CAAAACAAAT CAAATCCCAA ATCTCACAGT
  W
  GTTCTCTGAT CTCCACACCA TGACAAGTGC TTGTGGCCAC TCAAACACAC ATAGCACACA
  CAGGCACATA CAAGAAGCAT AAACACAAAA CAGTAATGCC ACCGAAAGTA CTGAATTAAT
  GGCTCTACTT CTAGATACGT CCAACAGGAC TGACGCACAT ATGAGCACAT ATAGGCTAGC
  AGCACACATA AGACTTGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45939378	mCV23495526	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss60887157	NES15965986	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30557305					SNP	A	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887157	NES15965986	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56882407 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			489 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr631119	regulatory region 631119			1932 bp distal
Rr631120	regulatory region 631120			806 bp distal
Rr631121	regulatory region 631121			within coordinates
Rr631122	regulatory region 631122			769 bp proximal