rs30557116 SNP Detail

Summary

• ID
  rs30557116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150929635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTGAAAC TCCTGAAATG
  TTCAGAGTCT CCAACTCATC AGTCAGCTCA CCGACAGGGG ACATGCAGAA GTGTGACTCT
  GCATGGCCTC TTTACATGGG CCTAAATGAG AAGCAGCTGA GATAGGAATA AATCCAAAAG
  CAGGAAGTTT CCCACAAAAT GCTATTGCTG TTGGACACAA ATGTAAACCG TAATGATTTT
  Y
  AAAAGAAGAA AGACTATTCA GTAGCCCAAA TTAAATTTGT TCCCAACAAT TTATTCATCA
  CTCAGTTTAA CAAAGAAAAT AAAGACCAAG TAGGTAGCAT GTTTTGAGAC AATGAATTTT
  ACGTAAAAAA TGCACAATTA CCAGTCTCTG GGACACTAAG TACTGTGCAC ATCAAGTAGA
  GGAATGCATA GGTCACATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47460457	NES10335667	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30557116					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47460457	NES10335667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150929635 () rs orientation: forward

Symbol	Name	Function Class
Rr587382	regulatory region 587382	1249 bp distal
Rr587383	regulatory region 587383	1344 bp distal