rs30556799 SNP Detail

Summary

• ID
  rs30556799
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57354974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGTGGC TTCTCTCTTT
  CGGTTGATCG GGTATGGCCG CTGCCTGCAG TCTTCTTCAG GGGACATTCC ACATTCCTGG
  ATTGTCCCCA CAGTATCTTA GGCTATACTC CCATAGTTTG TTCAGCACCT GCAGGGACCT
  CAGTCCTACC ACACATGGCC TGGCCTCTCA CCGTTTCCTT TGAAATCTGG GTAAACACTT
  K
  GGTGACCCCA GACCTCGTAT AGTCTCCTTC CTCCCCTACA GAGTGGGGGC TCCTCTGCAT
  GTGCTTCTTT TGAGCATTGG GCCAGGCATG CAGTAAGTGA TCATTAAAAA GAGATATTAA
  CCCTGTTATG TTAATGGAAC TAAGTTATCC TGCTCAGGAG AAACAGAAAG CCCTTAACAC
  ATGGACCCTT GAGGAACATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45442428	mCV24427982	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss135201374	ENSMUSSNP6669158	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30556799					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57354974 () rs orientation: forward

Symbol	Name	Function Class
Rr577097	regulatory region 577097	1348 bp distal
Rr577098	regulatory region 577098	323 bp proximal
Rr577099	regulatory region 577099	523 bp proximal
Rr577100	regulatory region 577100	965 bp proximal
Rr577101	regulatory region 577101	1125 bp proximal