rs30556798 SNP Detail

Summary

• ID
  rs30556798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCTCT CTCTCTCTCT
  GAGTGTGGCT AATGTCACAC TCCTATCTTC TCTTGTATGA TAGAGGAATA TGAACCTTCC
  TCCCTGCAGT CATAATCAAG CCATGGTCAT CATAAATGAC ATACACTCAA AACACAAAAC
  GAAAAACAAA ACCCTAAGAT CGATATAACA TGAAAAAGAC TCTCATCTCA TGGAAATGAA
  Y
  GGCCCACAGC ACGTGAAATA CAGGGCAGTA GGTTCATAGA CACATAATTC CGGACATCTT
  TTACAATTTT ACCATTGACT TCCTTTGATT TTTGTACAAG CCACTGACTG TTCTATCTCT
  GTACTTCAGC ACAATGGCCA TCCCTGAACA CATTTCGTAA CTCTTTTACC TAGTTCACCT
  CGCCCTCGAG CAAAGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45442427	mCV23542533	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss47026161	NES10759787	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss135359226	ENSMUSSNP6503917	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30556798					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026161	NES10759787	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502948 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	695 bp upstream
Rr578423	regulatory region 578423	706 bp distal
Rr578424	regulatory region 578424	279 bp distal
Tssr33603	transcription start site region 33603	1276 bp upstream
Tssr33604	transcription start site region 33604	1222 bp upstream
Tssr33605	transcription start site region 33605	1207 bp upstream
Tssr33606	transcription start site region 33606	1192 bp upstream
Tssr33607	transcription start site region 33607	1119 bp upstream
Tssr33608	transcription start site region 33608	1024 bp upstream