rs30556638 SNP Detail

Summary

• ID
  rs30556638
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104958896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT GCAACTGCTA AAATGCCAAA
  K
  ACTTTAGTAG ATCTTTACAG GGACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45442624	mCV23788108	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss135572928	ENSMUSSNP1324485	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30556638					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104958896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	995 bp proximal
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr367520	regulatory region 367520	1461 bp upstream
Rr582659	regulatory region 582659	within coordinates
Rr582660	regulatory region 582660	1361 bp proximal
Tssr34913	transcription start site region 34913	980 bp downstream
Tssr34914	transcription start site region 34914	1107 bp downstream
Tssr34915	transcription start site region 34915	1336 bp downstream
Tssr34916	transcription start site region 34916	1368 bp downstream
Tssr34917	transcription start site region 34917	1545 bp downstream