rs30555799 SNP Detail

Summary

• ID
  rs30555799
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129486653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGT TGGTGCAGGC GGCATTCTCA
  S
  CGCAGTTGTG CGCCCCCCGC TGGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45442814	mCV25348222	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss135887986	ENSMUSSNP4607988	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320962833	CHEV_3_129395922	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30555799					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129486653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr585067	regulatory region 585067			7 bp proximal
Rr585068	regulatory region 585068			645 bp proximal