rs30554567 SNP Detail

Summary

• ID
  rs30554567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87661789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC ACCACCACCT CCCAGGCAGC
  Y
  GGGCTGTGCA CTTACCGGGC AGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45440177	mCV25326271	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss135468080	ENSMUSSNP5613174	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T		C
ss320835359	CHEV_3_87558404	CHEVERUD	SCREENING_POP	f	SNP					T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30554567					SNP	T	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87661789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13335	CpG island 13335	1381 bp proximal
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	1638 bp proximal
Tssr33951	transcription start site region 33951	1223 bp upstream