rs30553703 SNP Detail

Summary

• ID
  rs30553703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101263145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTGAGA GTAAGGATCA
  GAGCTGGGCT GGTGTGGTAT GGTGTGGTGG GTTTTGCACA AAGCTGCATT TTAAAGGACA
  ATTAAAGGAC AGCTCTTTTT CCCTAAGTAA TGTCCTTTAA TATTTTGTTT CTCTTTTTGG
  CAGTGCTGAG CTATAAGTGA TGGGAGAGCT GTTTTGGTGT AACCTCTTGC AGAAGGTCCC
  R
  ACAGACCAGG CTAAAAATAA AAACCAGTCG TTTAAAATGA AGTTCCGCGT CACCAAAGTG
  AGACTAAGCT GTTTATCTGA CCTTGTCAGG AATCAGGGCG ACAGAGATGA TAGCTTGCAA
  ACAGCCAGGT TCAGGCAGCA GAATAATGAA GGCTACTGTG CCCTAATCCG AAAAACCCCC
  TTACCTCCAA AGTACCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45442397	mCV23815902	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				A		A
ss46813958	NES10711675	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G	A	A	A		G	A	A	G		G
ss135546733	ENSMUSSNP1943521	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss320851923	CHEV_3_101159752	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30553703					SNP	A	A	G	G	A	G	A	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813958	NES10711675	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101263145 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	1226 bp upstream
Rr582017	regulatory region 582017	1374 bp distal
Rr582018	regulatory region 582018	736 bp distal
Rr582019	regulatory region 582019	within coordinates
Rr582020	regulatory region 582020	855 bp proximal