rs30553692 SNP Detail

Summary

• ID
  rs30553692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95406173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACACAC GTGACTTTCT
  GGCCACTTTT GAACCATCTC ACCTGGACTT TGTGGGCAGC TCCTCCCTTG ATGTACAGCC
  ATAATGGGTT AGAAAAACTA CTCCATGCCC AGAAGCAGTT AATAGCAAAC AGTCACAAAA
  CGGTTTTAAA TGTTTAAATT AGAGCCTTAC ATTTCTAGCC TTTCCTCCCC TCTCCCTCAC
  Y
  CCACCCCCAT CATCTCAGAA GAGGATCTGA CACAACGTTG GAAATGGTGC AGAGTAAGGA
  GGTGGGTCAG AACTAGATGA GTTGAAAAGA TGGAAATTGC CAGTCAGACA TTTTGAGGAA
  GAATGGAGAC AACTAGGGCT GTGTTCTTAA ATCTCCCACC AAAGTCTCAA TTTGAATATT
  GTGCTATCTT ATTTTTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45442593	mCV24564017	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss135511867	ENSMUSSNP4955267	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30553692					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95406173 () rs orientation: forward

Symbol	Name	Function Class
Arnt	aryl hydrocarbon receptor nuclear translocator	1622 bp downstream
Ctsk	cathepsin K	394 bp upstream
Rr580952	regulatory region 580952	294 bp distal
Rr580953	regulatory region 580953	270 bp proximal
Rr580954	regulatory region 580954	779 bp proximal
Tssr30555	transcription start site region 30555	355 bp upstream
Tssr30556	transcription start site region 30556	361 bp upstream
Tssr30557	transcription start site region 30557	394 bp upstream
Tssr30558	transcription start site region 30558	411 bp upstream
Tssr30559	transcription start site region 30559	930 bp upstream
Tssr30560	transcription start site region 30560	994 bp upstream
Tssr30561	transcription start site region 30561	1029 bp upstream