rs30553429 SNP Detail

Summary

• ID
  rs30553429
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58424000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGTTCCCA AGCTAACTTT GTTTGTTTTG TTTGAGATGC
  CAAGTGTTAA CTCTTTGTAG CTCAAAGTGG CTTCAGAGCT GATCCTTCTG TTTCAGCCTT
  M
  TGGAACAGTG CTGAGGTATA AGCATTTACA GCCATGCCAA ACTATTGCTA AGTTCTGAAC
  TTGACAAATG TACCATCGTA TTGATGTCAA TGTAAAGGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45442091	mCV24915831	ABI	CRAMUS_MOUSE	f	SNP		A	C					C
ss46981035	NES10792935	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	C	A	C		C	C	C		A
ss135207023	ENSMUSSNP3915136	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					C
ss320783115	CHEV_3_58320501	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30553429					SNP	A	A	C	C	C	C	C	C	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981035	NES10792935	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58424000 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	1421 bp upstream
Rr397679	regulatory region 397679	within coordinates
Rr397680	regulatory region 397680	678 bp upstream
Rr577244	regulatory region 577244	70 bp distal
Rr577245	regulatory region 577245	931 bp proximal
Rr577246	regulatory region 577246	1432 bp proximal
Tssr29205	transcription start site region 29205	909 bp upstream
Tssr29206	transcription start site region 29206	958 bp upstream