rs30553227 SNP Detail

Summary

• ID
  rs30553227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38537289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC CATTCTCGAC AGTAAAACTG
  Y
  TTCCCTTGCA GCAGACTCGT CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45441053	mCV22716814	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss134837193	ENSMUSSNP5015819	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320719949	CHEV_3_38382062	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30553227					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38537289 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	Coding-Synonymous
Cpgi13104	CpG island 13104	1155 bp proximal
Gm65619	predicted gene, 65619	1965 bp upstream
Rr397648	regulatory region 397648	1609 bp upstream
Rr575674	regulatory region 575674	1710 bp distal
Rr575675	regulatory region 575675	1085 bp proximal
Rr575676	regulatory region 575676	1694 bp proximal
Rr575677	regulatory region 575677	1976 bp proximal
Tssr33057	transcription start site region 33057	1639 bp downstream
Tssr33058	transcription start site region 33058	1662 bp downstream
Tssr33059	transcription start site region 33059	1691 bp downstream