rs30552972 SNP Detail

Summary

• ID
  rs30552972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55003613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAAGGA CCCTTACAAG
  AGTGGATAAG AGTTCCATAA TCCGCAAGGG AAGCTGGGAA ATGTAGTTTT TCAGCAAGAA
  AGTCTCGGGT TTACATGAAG TCTTTGAGTT TGTAAAAAGC ACAGTCCATT TGGGGCAGCA
  GTGAGTGCTC AAAAAGTTAA GGGTTTTTGG AATGTTTCAG ATATCAAATT TCAGATGATG
  R
  CTGCTACAGC TGAATAAATT TTGGACTCAA TGCAAATACC AAGCCATTTT ACACGAGGGA
  TTTGAGCAGA CTCGGGTTTT GCTATCACTG TGAATAGCCT GGAGCTACTC TCCTGGGTCT
  CAAAAAAACA GGCTGTGAAG TTAAAATTTA GGTCGATTAG ATATTCTTGA CTTGCTGGGT
  GGTCATTTTA AACTGCGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46960022	NES10819095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30552972					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46960022	NES10819095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55003613 () rs orientation: forward

Symbol	Name	Function Class
Rr576897	regulatory region 576897	within coordinates
Rr576898	regulatory region 576898	1878 bp proximal