rs30552968 SNP Detail

Summary

• ID
  rs30552968
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54995408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACCTGTG GGTCAAAAGA
  CCTTCACTGC ACTATACAAC AACATATACA GGGCTTTTTT TTTGCATGGT TTTATGCTGA
  TCAATGAAGT ATGCAAAACA TATCCATACA GCCTTGGGGA AATTTGTACA GAATAGGAAC
  CAAGTTTGAA AGTTAATTTT ACTAAAATTT TATATACAGA TTTATATACA ACAGGCTGAA
  K
  GCAGGTTTGG TAGATGACTT AAAGCAAAAG GGGCTTGATT TGACCTTAGG AGGGAACATG
  TTTGCTGTGA GGGTCACTTT TGTAACCCAT GTATGCAGAT GGCCAAAATG CCTATAGAAG
  AAGATAGACA GGACCCTCAT AGGGACAGAA AGAACTTCCC TAGTCTGCAA GGGCAGCTGG
  GAAGTGTAGT CTTTCAGCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46960018	NES10819288	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30552968					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46960018	NES10819288	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54995408 () rs orientation: forward

Symbol	Name	Function Class
Rr576894	regulatory region 576894	1902 bp distal
Rr576895	regulatory region 576895	290 bp distal
Rr576896	regulatory region 576896	900 bp proximal