rs30552513 SNP Detail

Summary

• ID
  rs30552513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17850682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT CCTCTTTCTT TTCCTCCTCC
  R
  TTACCTCCTC CCCCTCCTCT TGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45440853	mCV22663604	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss134653812	ENSMUSSNP5097012	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320673728	CHEV_3_17696518	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30552513					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17850682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	1500 bp distal
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	748 bp downstream
Mir124b	microRNA 124b	777 bp upstream
Rr573852	regulatory region 573852	1205 bp proximal
Rr573853	regulatory region 573853	1908 bp proximal
Tssr28489	transcription start site region 28489	772 bp downstream