rs30551968 SNP Detail

Summary

• ID
  rs30551968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54995087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGCAAG CTTTAGAGAT
  TTGGCACAAG TCTCCCCGAA AGAAGCCTCA AATGACACCA AGTACTAAAA TTGGTATTGG
  AGATTAGGAA GGGGTAGAGA TGAAAAAATC GAGAATGCCT GGTGTTTGGC TACAGGGAGG
  CAGGCTGTGT AGAGTCTGAG AGTAACCCTC TGCTTCATCT CTGTCTTCAT CTCTGTCTTT
  Y
  CCTGGGTTCA TTCTGCCCTC TGCAGGCCAG GACAGCAGAT GTTTTCTTTG ATTCTGTCAG
  TTGCTTCTGC TTACTGTTGG CCTGAACGCC CCTGTCTGAG TGTCTATATC TATAAATTTA
  TCAACCTGTG GGTCAAAAGA CCTTCACTGC ACTATACAAC AACATATACA GGGCTTTTTT
  TTTGCATGGT TTTATGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46960008	NES10819275	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30551968					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46960008	NES10819275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54995087 () rs orientation: forward

Symbol	Name	Function Class
Rr576894	regulatory region 576894	1581 bp distal
Rr576895	regulatory region 576895	10 bp proximal
Rr576896	regulatory region 576896	1221 bp proximal