rs30551842 SNP Detail

Summary

• ID
  rs30551842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153440599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACGGATTT GTCTGAATAA
  AACGGAAACA CTCGAAGTGA CTGACAAGAT TTACGAAGAG TGTGAAATTT TATGGTAAAG
  CGGTCCTGGT AGATGTGAAT GCGACTCCGC CTAGCTCCCG CGACCATGTT ACCACAGAGT
  AACATAAAAA GGGTGACTGT CCTGGGTTAT GCTGGGGGTG GGAGGGACTC TGAACCTAGG
  Y
  GAGCCAAGCC TTCTCAACAG GCAGCTGGCC TGCCTCTCCT GATGCCAAGG CTGGCAACTG
  TATCTTTTGT CCTTCAAAAG TTAACAGGCA GAAGCAATCT ACCTCTGCTC ACAGACACCT
  GGAAACATCA AACACAGCAT GGCTCTGCCT CTTGTGGAGC CACCCTCCTC ACACAAAGCT
  AGAAACTGTG ATCAATATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45439951	mCV23504380	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136111947	ENSMUSSNP2979807	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30551842					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153440599 () rs orientation: forward

Symbol	Name	Function Class
Rr587743	regulatory region 587743	1889 bp distal
Rr587744	regulatory region 587744	518 bp distal
Rr587745	regulatory region 587745	1868 bp proximal
Tssr36241	transcription start site region 36241	1033 bp upstream