rs30550077 SNP Detail

Summary

• ID
  rs30550077
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119452833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA GTGTTGTCCT CTGATGTCTA
  W
  AAAGAGGGTC TTGCCATGTA GCCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45939498	mCV24874524	ABI	CRAMUS_MOUSE	f	SNP		A					T
ss48076027	NES11870470	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	T	T	A		A	A		A
ss133589782	ENSMUSSNP2910730	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					T
ss321928111	CHEV_6_119425890	CHEVERUD	SCREENING_POP	f	SNP										A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30550077					SNP	T	A	A	A	A	A	T	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076027	NES11870470	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119452833 () rs orientation: forward

Symbol	Name	Function Class
Rr637690	regulatory region 637690	1784 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron