rs30549488 SNP Detail

Summary

• ID
  rs30549488
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89320823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT ATTAGAGCCA ACAGGACACC
  K
  CCATGGGGGA AAGCAGCCTC TTGAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45939391	mCV24907632	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss133371863	ENSMUSSNP989452	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321851960	CHEV_6_89293835	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30549488					SNP	G	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89320823 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	1299 bp upstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	662 bp proximal