rs30549370 SNP Detail

Summary

• ID
  rs30549370
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121088391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTAAGA AATGGGGGTT
  GGAGAGATGG CTCAGCGGTT AAGAGTACTG ACTGTTCTTC CAAAGGTCCT GAGTTCAAAT
  CCCAGCAACC ATATGGTGGC TCACAGCCAT CCATAATGAG ATCTCACACT CTCTTCTGGT
  GTGCCTGGAG ACAGCTACAG TGTACTTATA AAGTAAATAA ATAAATCTTT TTTTAAAAAA
  W
  GTTAAGAAAT GAAGAAGTGA TTGGATGCTG GGTGTGTTTT AAGGTATATC TAATAGTATT
  TTATCAGTTC ATAATGATCT CCAGTGTGTC TCTTTTTTAA AGATTTCCTT TTTATGTGTG
  AATATATCTG TATATTCATG TGGCTGCCCA TCTACTAAAA TAATTTTCTC CTTCCTACTT
  TAAGAAAGAT TTATTTTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45439636	mCV25270609	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30549370					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121088391 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Rr584041	regulatory region 584041			445 bp distal
Rr584042	regulatory region 584042			325 bp distal