rs30549004 SNP Detail

Summary

• ID
  rs30549004
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55004222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGGTAG GGAACCATAA
  GCCAGTGGAT ATTCTCTTAG TGGATATTCT CGCCATTTCA ATTGTTTTGC CCATGCCCTC
  TGTCCCTTTA TTTAAGGGGT AGGCAGCTTT ATTTTTAGGG CTGAATCTCT GTCTATCTTC
  TACTATGCTT CTGTCTAGAA GATAAGAAAG GGCTCACAGC GCTGGGTCCA TGTTTTCATA
  W
  GCAATCTGAG TTCACTGCCT TGTGCACAGT GAGGGCTCCT GTGTAAACAC AGAAATTTTG
  AGAAAGTCTG AAAGGACATT AGCAATATAA AAACGGGATT TCATGGGTCC TAAGAATGCA
  GTGTTTTTTT TCTTTTACTT TCACCACTTA TTTTTATTAT ATGTGTGTGT GTGTATAATA
  TATACATACA CATCATACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46960035	NES10819053	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30549004					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46960035	NES10819053	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55004222 () rs orientation: forward

Symbol	Name	Function Class
Rr576897	regulatory region 576897	128 bp distal
Rr576898	regulatory region 576898	1269 bp proximal