rs30548197 SNP Detail

Summary

• ID
  rs30548197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60482498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT TGGAACAAAC AGCCAAGCAA
  Y
  GCCTCCAAGC TTGTTTATAC CAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45439810	mCV23103459	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135219662	ENSMUSSNP6722911	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C		C
ss320786676	CHEV_3_60378999	CHEVERUD	SCREENING_POP	f	SNP					T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30548197					SNP	T	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60482498 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577429	regulatory region 577429			414 bp distal
Rr577430	regulatory region 577430			897 bp proximal
Rr577431	regulatory region 577431			1284 bp proximal
Tssr29310	transcription start site region 29310			760 bp upstream