rs30547289 SNP Detail

Summary

• ID
  rs30547289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152062806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGACTAGG CAGTGGTGCG
  TGACCGAAAG GAAAGCCCTG GAGAGCAGAG CAGTGGTGAT GACACCATGC ACAGAAGCTT
  CAGCACATCC GGCTTAGGCC GGACCAGACC CCAGCACAGA GGGGGAGGTG AGCAAGAAGT
  CTGCTCCGGG CCCAGGCGCT ACTGCACTTG ATAGTTGCTA GTGGAGGCTG AGTCAAGTTA
  Y
  GTTTTTGAGC GTAGTCCCAG GTTAACCATT CTCCAGTGGA AGGTCACACA TCCAAGAATA
  TATAGGCAAC ACAATTGCAT TTGATTGGTA TTAAAATAAA AGACACAAAT TTTGGTGGGT
  AGGAAAGGAG AGGTGGATTT GGGGAAGAGT TGAGGAAGGG AGAAAATAAT GATCAAAGAT
  GTGTGAAATT CTCAAAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45440890	mCV25311392	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss136102683	ENSMUSSNP1590506	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321028746	CHEV_3_152020133	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30547289					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152062806 () rs orientation: forward

Symbol	Name	Function Class
Rr587538	regulatory region 587538	1153 bp distal
Rr587539	regulatory region 587539	within coordinates
Usp33	ubiquitin specific peptidase 33	Intron