rs30544105 SNP Detail

Summary

• ID
  rs30544105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19216952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGTGGG AAACTTCTAC
  TGCAAGCGCT GAGGAGACAG TATCACCAAA GGAGCAGCTA AGTGCACAAA TGCCCACCAC
  CTGTGTACAC GAGTTTCTCT TGAATGGAGG CCTGCGCGCA GAGGCTCGCA GATTTACAGA
  AAGAACGCCG CGACATGGAC ACCCGCTACT CGTAGGGCGG GCTGGCTGGT CAGAAGGAAG
  M
  GGAGAGAAGA GCACGTCCGG AGCCGTCCGA GGCAGCCCGC GGGATGCCGG CAGGAGGCGG
  GCGCAGCGGC CGGCCCGCGC AGCAGCGGCC CCTCGGCCCC ACCTCGGCCC CGGCTACGTA
  CCCTCCAGAG CTCCGGGCGT CCGGAGCCTG CCGCAGCATC AGAGCCGCAC CCACCACGGC
  GGACAACGGG CGGCGAAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45439398	mCV22998925	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30544105					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19216952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Armc1	armadillo repeat containing 1			Intron
				mRNA-UTR
Cpgi13000	CpG island 13000			within coordinates
Gm65410	predicted gene, 65410			418 bp upstream
Rr397613	regulatory region 397613			215 bp upstream
Rr573944	regulatory region 573944			within coordinates
Rr573945	regulatory region 573945			43 bp proximal
Rr573946	regulatory region 573946			267 bp proximal
Rr573947	regulatory region 573947			521 bp proximal
Tssr32687	transcription start site region 32687			223 bp downstream