rs30533546 SNP Detail

Summary

• ID
  rs30533546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147511148 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  AGTTTGATCT GTGGATCTCA CAAGGTGGAA GGAAGAGAAT CTATACCTTA GAGTTGTCCT
  CTGACCTACA GAAGTGCCAG GCAGGACCCT CCCTCACCTC ACACCACTCC AAAGGGGTCT
  GGACATAGGG GTTTTAATGT ACTTAGCATG AAAGGCTTAT CTAAAACTAA GACAAGTTCA
  GAAGAATTGC CATAGAAGAC AAAAACTGAA GCTGTTAGAA TTTAAAGAAT ACTTCAGGCT
  AGTTTTGGAA GCCCTACCTA CTTTTCTGAA TGCAACAATT CTCTTATTTG AAACATTGTC
  Y
  CATTATATCA AAGGGAAACA TGAAGTGTGC AGTAAAGATA GTTAGGGAGG TGGAGTAAAG
  AGGAGAGGGT TTCCCCACCA TCAAGGTGAA GGCCAGTTTG TCCACTTTCT CCTGTTTTCA
  TTTTAATTAT AGGAATTAGA GCTTTGGAGC CGAAGAGATG GCCGAGCCAC TAAAGACTAG
  GTTCACAAAC AAAAATATAA GAAGTTGGAG ATTTGTATGG AGAGAAGAAC ACATGTCCTA
  GTTTATGTGG CAAATTCTCA CTTACACACT TCCCCTCTCC AATATAAATA GTGCCTCCTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46417941	mCV22800248	ABI	CRAMUS_MOUSE	f	SNP	C		T	C
ss147959092	ENSMUSSNP3948057	ENSEMBL	ENSEMBL_Sanger	r	SNP		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30533546					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147511148 () rs orientation: reverse

Symbol	Name	Function Class
Rr398813	regulatory region 398813	1170 bp upstream
Rr604485	regulatory region 604485	472 bp distal
Rr604486	regulatory region 604486	558 bp distal