rs30531344 SNP Detail

Summary

• ID
  rs30531344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126573681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTAATT TGCAGTTTCT
  TTTGCCAAAT GTCTGTAGGT TGGTCCAACT TTGGGTATCG TTTTGCCAGG TTTTCGCCTG
  CTGAAAATGC CTGTGCTCTG TTTGGCTTCT CAGTCCTTGT CATTGGCCAA GTGTGCACCT
  TGAGTGGTCC ATGAAGGCAT GTGAGCAGGT GAAGACAGCA GCCCTACTAA CTGCATCCTT
  Y
  CCTGTTGCCT TTGCAGTGCC CAATGAGTTT GTCTGATGCC TGTAGACATG ATTGCTCTCT
  ACCGTTTTTC TAACCATCCT TTCCCTGGGA TTTAGGAATG GAAATCTCCC GGAGAGACAA
  CAGTGCATGA GTTTGCTTCC CATTCCCCTC CCCTCCCTTC CCCTGCCCTG CCCTGTTTAA
  TCTTGTACAA ATGTTGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46957805	NES10668822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30531344					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957805	NES10668822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126573681 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			330 bp upstream
Tssr31580	transcription start site region 31580			365 bp upstream
Tssr31581	transcription start site region 31581			376 bp upstream