rs30527748 SNP Detail

Summary

• ID
  rs30527748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83978379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG GAAGTACCTT GCCTTCTGAC
  Y
  AGCAGTGCAC AGCAGCTCAC CTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45439242	mCV24158569	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C
ss51568934	NES14673799	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T	C		C	T	C	T	C	C
ss135420316	ENSMUSSNP3750897	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30527748					SNP	T	T	C	C	C	T	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51568934	NES14673799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83978379 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Gm65750	predicted gene, 65750	897 bp upstream
Rr397735	regulatory region 397735	1594 bp downstream
Rr578974	regulatory region 578974	1632 bp distal
Rr578975	regulatory region 578975	1272 bp distal
Rr578976	regulatory region 578976	407 bp proximal
Rr578977	regulatory region 578977	716 bp proximal
Tssr29729	transcription start site region 29729	926 bp upstream