rs30527407 SNP Detail

Summary

• ID
  rs30527407
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6739988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATACTGGGG GGTGGGGTCA GTAGAGGATG TATGGAATCT GGGGCAAACC AGTCAGCACC
  GAGTTACCTT ATCTCCCAAA TTCATTTAGA AATCTATAAA TAAATACATG CCCAGCATGG
  ATATGTAGGC TCCATGTGGG TTTGTTCACA CCCCCACATA AGCATACACA TACACACAGC
  ATGTTTTACT ACAGTATGTG ATTTAGAATT TTATTATTTT TGTTACATTA TCAAATATTC
  ATATATGTTT CAAACGACAT TATGAGCACC CCCATATATA TAGATATAGA TATATAGATA
  K
  ATATAGATAG ATATAGATAT GTAGATATAG ATATATAGAT ATAGGTATAG GTATAGGTAG
  ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGGT ATATAGGTTT
  ATAGGTATAT AGGTATATAT GTATGTAGAT ATATAGATAT ATTGAAGTAA AGGTTTCCAC
  TGATTTACAT GGAAGGATTT TGCTGTCAGA GAACATAAAA GCAGTGATCA CTGGCCTGTA
  GCATTCAGGC ATGATTTTGT TTAGCATTTC CTACAAACTT GATCTATCCC ATTAATGCCT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45439173	mCV23348135	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	T
ss134550404	ENSMUSSNP6982275	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30527407					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6739988 () rs orientation: forward

Symbol	Name	Function Class
Gm54187	predicted gene, 54187	within coordinates
Rr573216	regulatory region 573216	458 bp proximal