rs30526447 SNP Detail

Summary

• ID
  rs30526447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83729331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT GGGAAGCCCC ACTCTTTTCA
  K
  ACAAGCCACT CAGCAATGAT GCCTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45938851	mCV22373498	ABI	CRAMUS_MOUSE	f	SNP	G	T						G
ss51352409	NES13741805	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	G	G	G	G		G	T	G
ss133350016	ENSMUSSNP5964205	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss321844749	CHEV_6_83702343	CHEVERUD	SCREENING_POP	f	SNP										T				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30526447					SNP	G	T	T	T	T	G	G	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352409	NES13741805	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83729331 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b1	ATPase, H+ transporting, lysosomal V1 subunit B1	Intron
Gm66892	predicted gene, 66892	within coordinates
Rr632931	regulatory region 632931	1600 bp distal
Rr632932	regulatory region 632932	1847 bp distal