rs30525980 SNP Detail

Summary

• ID
  rs30525980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129820087 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCAGT GTGTAGACCA GGCTGTTCTT
  R
  AACTCACAAA GACCTACCTA CCTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46417191	mCV25339325	ABI	CRAMUS_MOUSE	f	SNP	G	G		A
ss147454510	ENSMUSSNP1051366	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C		C
ss321316107	CHEV_4_129603538	CHEVERUD	SCREENING_POP	r	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30525980					SNP	G	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129820087 () rs orientation: reverse

Symbol	Name	Function Class
Rr600384	regulatory region 600384	1225 bp distal
Rr600385	regulatory region 600385	147 bp proximal
Rr600386	regulatory region 600386	502 bp proximal
Rr600387	regulatory region 600387	1945 bp proximal