rs30523256 SNP Detail

Summary

• ID
  rs30523256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54824125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCTTGG GTTCTTTTTT
  ATTCAAAGAC CCAGTTGGCT CCCTGGTCTA TATGATCTGA AGCACTGAGC TCTGGGACAT
  GTTGGTTACT TTTTGTTGAT GGATTTTCAC CCGGAGGACC GCCCCCCCCC CCCATTTTTT
  GGCTTAAAAG TGAACCAACA AAGCACTGGG CTGCCTAAAT CTTCGTGACA GCTCGTTGTT
  Y
  ACCAGTGCCT AGCTCCTGGA TTACACTGTT TCTGTCCACG TTTATTGGTT TTCCAGGTAG
  AGACAGGCAT GGGGCCTAAC TCTGAGACAC CGTTGTGATA AAAGCTATGC TGTCTCTGTT
  CTGCTTGTCC TGGGCATGTG AGTCTTTTCT ATGTGGATAT GCGTGTGCCT CACTTAAGAT
  GAGGGGGAGG GGGACGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46957458	NES10830757	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30523256					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957458	NES10830757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54824125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	537 bp distal
Gm31358	predicted gene, 31358	within coordinates
Rr576863	regulatory region 576863	1684 bp distal
Rr576864	regulatory region 576864	1183 bp distal
Rr576865	regulatory region 576865	863 bp distal
Rr576866	regulatory region 576866	687 bp distal
Rr576867	regulatory region 576867	801 bp distal
Rr576868	regulatory region 576868	275 bp distal
Sertm1	serine rich and transmembrane domain containing 1	817 bp upstream
Tssr33288	transcription start site region 33288	877 bp upstream
Tssr33289	transcription start site region 33289	820 bp upstream
Tssr33290	transcription start site region 33290	683 bp upstream