rs30523254 SNP Detail

Summary

• ID
  rs30523254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54824004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAATCAT TAAAGACTAC
  ACGGATAAAT GTCACAATCC TATAAAGGAA CGATGGAACG GGAGCCTTCC GTGCCTGGGC
  TTGTTTAGAT GCTTTGGGGA GAAGAGAAGC TTGGTTTCTT TGGTGTCTTG GGTTCTTTTT
  TATTCAAAGA CCCAGTTGGC TCCCTGGTCT ATATGATCTG AAGCACTGAG CTCTGGGACA
  W
  GTTGGTTACT TTTTGTTGAT GGATTTTCAC CCGGAGGACC GCCCCCCCCC CCCATTTTTT
  GGCTTAAAAG TGAACCAACA AAGCACTGGG CTGCCTAAAT CTTCGTGACA GCTCGTTGTT
  CACCAGTGCC TAGCTCCTGG ATTACACTGT TTCTGTCCAC GTTTATTGGT TTTCCAGGTA
  GAGACAGGCA TGGGGCCTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss46957456	NES10830756	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30523254					SNP	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957456	NES10830756	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54824004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	416 bp distal
Gm31358	predicted gene, 31358	within coordinates
Rr576863	regulatory region 576863	1563 bp distal
Rr576864	regulatory region 576864	1062 bp distal
Rr576865	regulatory region 576865	742 bp distal
Rr576866	regulatory region 576866	566 bp distal
Rr576867	regulatory region 576867	680 bp distal
Rr576868	regulatory region 576868	154 bp distal
Sertm1	serine rich and transmembrane domain containing 1	696 bp upstream
Tssr33288	transcription start site region 33288	756 bp upstream
Tssr33289	transcription start site region 33289	699 bp upstream
Tssr33290	transcription start site region 33290	562 bp upstream