rs30522290 SNP Detail

Summary

• ID
  rs30522290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54823636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACGAGGG AGGAGCTTAC
  ACCCTGGTTG GAGGACGAGG AGGCGTTTGC GCGGGGAGCC CCATCTGGGG AAGGCAGGTG
  TGGTGTGCTG AACTTTTGTG GCGATATGTG GTGGGCTTCA GTTTTTTTTT CCCCCCTAGG
  CTCAGGGGAA AGCATCCCTT TCCTGTCAAA GTTTCCCTTC TTATGTCTTT ACGAGTCCTG
  Y
  GCAGCCTCCA CTCCAAAAGG GCGAGCTGCA AGGGACATCG CCTTCTATGA TGAATTTCAC
  CTCAGCCCCC TCCCCCATTC AGTCTTTCTC CTTCCCGCCC TCTCAGTCCT CTGAGAAACC
  ATCTAATGAA TGAATAGAAC CATGGTTTCT ACGACCGCCA GTCACACAGA TAATCATTAA
  AGACTACACG GATAAATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss46957452	NES10830750	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30522290					SNP	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957452	NES10830750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54823636 () rs orientation: forward

Symbol	Name	Function Class
Gm31358	predicted gene, 31358	within coordinates
Rr576863	regulatory region 576863	1195 bp distal
Rr576864	regulatory region 576864	694 bp distal
Rr576865	regulatory region 576865	374 bp distal
Rr576866	regulatory region 576866	198 bp distal
Rr576867	regulatory region 576867	312 bp distal
Rr576868	regulatory region 576868	within coordinates
Sertm1	serine rich and transmembrane domain containing 1	328 bp upstream
Tssr33288	transcription start site region 33288	388 bp upstream
Tssr33289	transcription start site region 33289	331 bp upstream
Tssr33290	transcription start site region 33290	194 bp upstream