rs30522285 SNP Detail

Summary

• ID
  rs30522285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54822600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC GGGAAGAACT TATCCGAATT
  Y
  GCAGCCAGGC GAGGAGACTC AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46957446	NES10830743	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T	C	T
ss320773082	CHEV_3_54719101	CHEVERUD	SCREENING_POP	f	SNP					T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30522285					SNP	C	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957446	NES10830743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54822600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	223 bp proximal
Gm31358	predicted gene, 31358	840 bp upstream
Rr576863	regulatory region 576863	159 bp distal
Rr576864	regulatory region 576864	within coordinates
Rr576865	regulatory region 576865	641 bp proximal
Rr576866	regulatory region 576866	698 bp proximal
Rr576867	regulatory region 576867	703 bp proximal
Rr576868	regulatory region 576868	839 bp proximal
Sertm1	serine rich and transmembrane domain containing 1	mRNA-UTR
Tssr33288	transcription start site region 33288	635 bp downstream
Tssr33289	transcription start site region 33289	688 bp downstream
Tssr33290	transcription start site region 33290	806 bp downstream