rs30521787 SNP Detail

Summary

• ID
  rs30521787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108814560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT TTAAAAAAAC AAAAACAAAA
  Y
  GGATACTGTA CCTCTCAGTG GCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45938444	mCV24063844	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss321894213	CHEV_6_108787593	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30521787					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108814560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368139	regulatory region 368139			1473 bp downstream
Rr368140	regulatory region 368140			1225 bp downstream
Rr368141	regulatory region 368141			1982 bp upstream
Rr636220	regulatory region 636220			727 bp distal
Rr636221	regulatory region 636221			422 bp proximal
Rr636222	regulatory region 636222			1720 bp proximal
Tssr58109	transcription start site region 58109			1498 bp downstream
Tssr58110	transcription start site region 58110			1327 bp downstream
Tssr58111	transcription start site region 58111			1285 bp downstream
Tssr58112	transcription start site region 58112			1262 bp downstream
Tssr58113	transcription start site region 58113			1243 bp downstream
Tssr58114	transcription start site region 58114			1229 bp downstream
Tssr58115	transcription start site region 58115			1192 bp downstream
Tssr58116	transcription start site region 58116			966 bp downstream
Tssr58117	transcription start site region 58117			947 bp downstream
Tssr58118	transcription start site region 58118			901 bp downstream
Tssr58119	transcription start site region 58119			860 bp downstream
Tssr58120	transcription start site region 58120			1614 bp upstream