rs30521588 SNP Detail

Summary

• ID
  rs30521588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137575221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GTCTAAGCTT TGACACTAGC
  Y
  GTCACAAATT CTTACTTAGT CCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45439112	mCV23940926	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135944578	ENSMUSSNP5241745	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320976928	CHEV_3_137532424	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30521588					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137575221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13867	CpG island 13867	1076 bp distal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	Intron
Rr586006	regulatory region 586006	1775 bp distal
Rr586007	regulatory region 586007	1684 bp distal
Rr586008	regulatory region 586008	within coordinates
Tssr31918	transcription start site region 31918	1663 bp downstream
Tssr31919	transcription start site region 31919	1626 bp downstream
Tssr31920	transcription start site region 31920	1584 bp downstream
Tssr31921	transcription start site region 31921	1547 bp downstream
Tssr31922	transcription start site region 31922	1496 bp downstream
Tssr31923	transcription start site region 31923	1391 bp downstream
Tssr31924	transcription start site region 31924	1343 bp downstream
Tssr31925	transcription start site region 31925	1331 bp downstream