rs30521373 SNP Detail

Summary

• ID
  rs30521373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54822494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAAGGCA CACAGGCACA
  GTCCACAAAC CTGATCTTCA AGACGTTTCT GCGAATGAAT GTGGCTCTCT GTTCTCTCAG
  GAGGAGGGAG TGTTGCTTTT TCTTCGGTCT TAATGAGAAC TCAAACATTT GCCCATAATG
  CGCGCACCTC CCGCTTGCCT GGGAGGTGCA GGACTGCAGG CAATCTCGCC TCTCACATCC
  Y
  GGGAAAGAGA AGGGTTGAGA GTGAATTGCT TACCCGGTTT TGGGGGGAGC TAAGAAAGCT
  CCGCTGGGGA ACCCAAGAGT TCAGCGGGAA GAACTTATCC GAATTCGCAG CCAGGCGAGG
  AGACTCAAGG GAATACAGGA CAGAGAAACG CCAGCCGTCA ATGTGCCTGT GGCGACTCCC
  CAGGAAAAGC AGATGACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss46957444	NES10830740	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30521373					SNP	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957444	NES10830740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54822494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	329 bp proximal
Gm31358	predicted gene, 31358	946 bp upstream
Rr576863	regulatory region 576863	53 bp distal
Rr576864	regulatory region 576864	within coordinates
Rr576865	regulatory region 576865	747 bp proximal
Rr576866	regulatory region 576866	804 bp proximal
Rr576867	regulatory region 576867	809 bp proximal
Rr576868	regulatory region 576868	945 bp proximal
Sertm1	serine rich and transmembrane domain containing 1	Intron
Tssr33288	transcription start site region 33288	741 bp downstream
Tssr33289	transcription start site region 33289	794 bp downstream
Tssr33290	transcription start site region 33290	912 bp downstream