rs30521370 SNP Detail

Summary

• ID
  rs30521370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54822429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG AGAACTCAAA CATTTGCCCA
  Y
  AATGCGCGCA CCTCCCGCTT GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46957440	NES10830736	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T		C	C
ss320773081	CHEV_3_54718930	CHEVERUD	SCREENING_POP	f	SNP					C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30521370					SNP	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957440	NES10830736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54822429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13182	CpG island 13182			394 bp proximal
Gm31358	predicted gene, 31358			1011 bp upstream
Rr576863	regulatory region 576863			within coordinates
Rr576864	regulatory region 576864			13 bp proximal
Rr576865	regulatory region 576865			812 bp proximal
Rr576866	regulatory region 576866			869 bp proximal
Rr576867	regulatory region 576867			874 bp proximal
Rr576868	regulatory region 576868			1010 bp proximal
Sertm1	serine rich and transmembrane domain containing 1			Intron
				mRNA-UTR
Tssr33288	transcription start site region 33288			806 bp downstream
Tssr33289	transcription start site region 33289			859 bp downstream
Tssr33290	transcription start site region 33290			977 bp downstream