rs30521133 SNP Detail

Summary

• ID
  rs30521133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126421029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTATGT CACATTTTCC
  TGTTCTAGCT CTGTGACATG GCTGTGTTCC TTTAGTGAGA GCCGATTCAA AGATGTGGGA
  CCTGCTGGTC ATTTATTTGG CTTTTTGTCT ATACTTCTTG AAAAGAATCA AGTCAATTGG
  TGAATGTATT GAAATTGATG ACCTAAAAAA GTCTGAGGGA CAGATGCATG GGTTTTAACA
  Y
  TCAAGTATTT TAAGTATATG GTACCACAAT GACTGTTAAT AAATGATTTT CTATTGTGGT
  TATAAGTCTT TATCAATCAA GTGTTAACAG GAATCAGGAA AGATAGGAAA GGAATGTATA
  AACACAGTAA GGTAGACAGG GCTGTACCAG TGATATGAAG ATAAAGAAGT TGAAAATTTT
  TGTCAAGTGT TCTCTGCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46955923	NES10677232	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30521133					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955923	NES10677232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126421029 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			within coordinates
Rr584659	regulatory region 584659			1466 bp distal
Rr584660	regulatory region 584660			1055 bp proximal