rs30521015 SNP Detail

Summary

• ID
  rs30521015
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTACTT CCTTATTGCT
  TAGCACTTTA CTCTTTCTTG ACTAAGTGGG GATAAGGAAT AATTCTCATT GTTACTGACT
  CTCTCTCTCT CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAA GTTCAGTTGC
  ATGACTAAAA AAAGCAAAGT TTGTTGTTTG TAAGGGACAT TGACTGATAT AGAGCATTGA
  K
  TAACCTTAGG ATCATAGACT TTGTATTTAT AACTTCAGTT CCTTGGTTTT CATTCCTTCA
  GCCTTAAAGA ACACTTCCCA TACCTCAGCT TCTGCCAGAT GTGACGTGGG TGCGTGCCTT
  GAGCTGCACA CCTGTCCCAG TCAATGAAGA CTTACTGGCT TTCATGTTGC TTTCCAGTAA
  CTAAATGTCA CCCACTTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46956019	NES10676467	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	G	G	G	G		G	G		G
ss135837640	ENSMUSSNP191320	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				G
ss320946883	CHEV_3_126341592	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30521015					SNP	T	T	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956019	NES10676467	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			within coordinates
Rr584664	regulatory region 584664			309 bp proximal
Rr584665	regulatory region 584665			1937 bp proximal