rs30520715 SNP Detail

Summary

• ID
  rs30520715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126404608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGGACA TATTTATGTC
  TTTCCAAGCA AGCACTGATA ACCTTTTTTT TTCATTTCTT TATTTCTTTT CAAAGTTCGT
  AATTTTTTAT TATAAAATTT TATTTTCATT TATTTATTTT GTGTTACGTG TGGGCAAATG
  ACTTTGCCTG TATATGGAGG TTAGAGGACA GCTGGCAGCA ATTCTGGATA AAGGTCAGGT
  Y
  GTCAGGCTTG TGTGAAAGTT CCCTAATCTG CTGAGCCCTC CCAGCTGGCC CCTGCCTTTC
  CCCCTAACCT ACCTACTTCC TTGGCTGCCC ACTCCCTCTT TCTCTCTTTC AAACTGGACA
  TTTTGGTCTC CAGTTTTACT TAAAATTACA ACACATCCCT GTGTTGTGGA AATTCCTTTG
  AACTCTGAAG AACTGCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955619	NES10677964	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C	T	T	T		C	T	T	C		T
ss135837040	ENSMUSSNP747390	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320946673	CHEV_3_126313877	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30520715					SNP	C	C	C	T	C	T	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955619	NES10677964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126404608 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			1551 bp upstream
Rr584652	regulatory region 584652			1562 bp distal
Rr584653	regulatory region 584653			1061 bp distal
Rr584654	regulatory region 584654			within coordinates
Rr584655	regulatory region 584655			518 bp proximal
Rr584656	regulatory region 584656			1739 bp proximal
Tssr35522	transcription start site region 35522			903 bp downstream