rs30520522 SNP Detail

Summary

• ID
  rs30520522
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54821954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG CCTGCACAGT GAATCGGAGG
  M
  ACAGAAACGG AAAAGTATCC TAGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46957432	NES10830732	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C		A	C	A
ss320773074	CHEV_3_54718455	CHEVERUD	SCREENING_POP	f	SNP						A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30520522					SNP	C	C	C	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957432	NES10830732	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54821954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	869 bp proximal
Gm31358	predicted gene, 31358	1486 bp upstream
Rr576863	regulatory region 576863	168 bp proximal
Rr576864	regulatory region 576864	488 bp proximal
Rr576865	regulatory region 576865	1287 bp proximal
Rr576866	regulatory region 576866	1344 bp proximal
Rr576867	regulatory region 576867	1349 bp proximal
Rr576868	regulatory region 576868	1485 bp proximal
Sertm1	serine rich and transmembrane domain containing 1	Intron
Tssr33288	transcription start site region 33288	1281 bp downstream
Tssr33289	transcription start site region 33289	1334 bp downstream
Tssr33290	transcription start site region 33290	1452 bp downstream