rs30520516 SNP Detail

Summary

• ID
  rs30520516
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54821352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATCGCCT CCTCCTTCAT
  TTATCTGCCT CAATAAGTAA GATAGAGGAA GACAGGAAGA GGAATTCAGA AAGCTTGCAG
  ACAAATCTAC TGGTGCCAAG CACAATAGCA CAGTTGCTCT CTCTTAACAT CAGATCCACT
  TGTGACATAC AAACATCCAG TCAAATCAGG CAAGCCGAAC TGACCAAGGC AAAGGAGAAC
  M
  GAGCCCATCT TACCTGACAT CAAGCTTCTT CAGTGGCAGT CATGAATGTG CTCTGAGCTG
  GTTTTCAGAG AACTTTGCTT TTTACAGGGG AATAAAGGTG AGAAATAAGC ACCCCCCCCC
  TAACTCAAAA CACAAAATGG AATACTCTAC CCACTTCTTG GAGTTTAGAG GTCCCAGAAT
  ATTAATGGAC TGGGCTGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46957426	NES10830727	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30520516					SNP	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957426	NES10830727	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54821352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	1471 bp proximal
Rr576863	regulatory region 576863	770 bp proximal
Rr576864	regulatory region 576864	1090 bp proximal
Rr576865	regulatory region 576865	1889 bp proximal
Rr576866	regulatory region 576866	1946 bp proximal
Rr576867	regulatory region 576867	1951 bp proximal
Sertm1	serine rich and transmembrane domain containing 1	Intron
Tssr33288	transcription start site region 33288	1883 bp downstream
Tssr33289	transcription start site region 33289	1936 bp downstream