rs30520325 SNP Detail

Summary

• ID
  rs30520325
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126420304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATACTAA TAAACTCTGT
  GAACTACTTG TAACTGACAC CTCTGTGAAT TAATACACTT GTGATTTAAG GCAGATTCAT
  TAAAAAGTCT TATTGAATCC AAAATAATTT AACCTTTAAC ACAGGAAACA CCAGTGTAAT
  CCCCCAGCAG TGGATTGCTT TGACCGTAAG GAGAAAGATG TTGTTACTCC TAGGTGCCTA
  K
  ACTATAGACT AGAAAGTAGA ATGACCCACT TCTTGTCATC CAGAGGGGTC AGAGGGAAGG
  AGTGGGGCAC AAGTCTCATG TCAGTCATTA AGTATTTTCC CAGGAATCTG TGGACTTAAA
  ACAAGGGGTA GAACTTGTAG GATGGAGCAG AAATCCTTAC TCAGATAATT TTCATGATTT
  GAAGCACTGC TTGCTTCTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955905	NES10677223	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G	T	G	G	G	G		T	G	G	G		G
ss135837381	ENSMUSSNP3872020	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss320946793	CHEV_3_126329573	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30520325					SNP	T	T	G	T	G	T	G	G	G	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955905	NES10677223	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126420304 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			within coordinates
Rr584659	regulatory region 584659			741 bp distal
Rr584660	regulatory region 584660			1780 bp proximal