rs30519993 SNP Detail

Summary

• ID
  rs30519993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATCCACT TGGCTGTACT
  TCCTTATTGC TTAGCACTTT ACTCTTTCTT GACTAAGTGG GGATAAGGAA TAATTCTCAT
  TGTTACTGAC TCTCTCTCTC TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA
  AGTTCAGTTG CATGACTAAA AAAAGCAAAG TTTGTTGTTT GTAAGGGACA TTGACTGATA
  Y
  AGAGCATTGA GTAACCTTAG GATCATAGAC TTTGTATTTA TAACTTCAGT TCCTTGGTTT
  TCATTCCTTC AGCCTTAAAG AACACTTCCC ATACCTCAGC TTCTGCCAGA TGTGACGTGG
  GTGCGTGCCT TGAGCTGCAC ACCTGTCCCA GTCAATGAAG ACTTACTGGC TTTCATGTTG
  CTTTCCAGTA ACTAAATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46956017	NES10676466	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	C	T	T	T		T	T	C		C
ss135837637	ENSMUSSNP4725154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					T
ss320946882	CHEV_3_126341581	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30519993					SNP	C	T	C	T	C	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956017	NES10676466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			within coordinates
Rr584664	regulatory region 584664			320 bp proximal
Rr584665	regulatory region 584665			1948 bp proximal