rs30519991 SNP Detail

Summary

• ID
  rs30519991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGCTAC TGAATCCACT
  TGGCTGTACT TCCTTATTGC TTAGCACTTT ACTCTTTCTT GACTAAGTGG GGATAAGGAA
  TAATTCTCAT TGTTACTGAC TCTCTCTCTC TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTA AGTTCAGTTG CATGACTAAA AAAAGCAAAG TTTGTTGTTT GTAAGGGACA
  Y
  TGACTGATAT AGAGCATTGA GTAACCTTAG GATCATAGAC TTTGTATTTA TAACTTCAGT
  TCCTTGGTTT TCATTCCTTC AGCCTTAAAG AACACTTCCC ATACCTCAGC TTCTGCCAGA
  TGTGACGTGG GTGCGTGCCT TGAGCTGCAC ACCTGTCCCA GTCAATGAAG ACTTACTGGC
  TTTCATGTTG CTTTCCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46956015	NES10676464	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	T	T		T	T		C
ss135837634	ENSMUSSNP5976187	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss320946881	CHEV_3_126341571	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30519991					SNP	C	C	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956015	NES10676464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			within coordinates
Rr584664	regulatory region 584664			330 bp proximal
Rr584665	regulatory region 584665			1958 bp proximal