rs30519683 SNP Detail

Summary

• ID
  rs30519683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108815272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTTAAATG CAAGACATGT CCTGATAAGC CATACTGGGC
  GTGTCAGGCT CTCATGTACT TCATGGCACA GCACCACAGA GCATGGGTTC CAGGGGATAT
  Y
  CCCAGTGCCC TGCAGTCTCC TTAGTAATTT CACAAACTCT CCTTTGTTCT CTCTGAGAAG
  TCTTTACCAT TAGAAAGCCA TTAAATCTTA TATCAAGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45938059	mCV24063854	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30519683					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108815272 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368140	regulatory region 368140			1937 bp downstream
Rr368141	regulatory region 368141			1270 bp upstream
Rr636220	regulatory region 636220			1439 bp distal
Rr636221	regulatory region 636221			within coordinates
Rr636222	regulatory region 636222			1008 bp proximal
Tssr58111	transcription start site region 58111			1997 bp downstream
Tssr58112	transcription start site region 58112			1974 bp downstream
Tssr58113	transcription start site region 58113			1955 bp downstream
Tssr58114	transcription start site region 58114			1941 bp downstream
Tssr58115	transcription start site region 58115			1904 bp downstream
Tssr58116	transcription start site region 58116			1678 bp downstream
Tssr58117	transcription start site region 58117			1659 bp downstream
Tssr58118	transcription start site region 58118			1613 bp downstream
Tssr58119	transcription start site region 58119			1572 bp downstream
Tssr58120	transcription start site region 58120			902 bp upstream