rs30519593 SNP Detail

Summary

• ID
  rs30519593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126420277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTAATTA CTCCTGGCAG
  CCTTCAGTTC ATACTAATAA ACTCTGTGAA CTACTTGTAA CTGACACCTC TGTGAATTAA
  TACACTTGTG ATTTAAGGCA GATTCATTAA AAAGTCTTAT TGAATCCAAA ATAATTTAAC
  CTTTAACACA GGAAACACCA GTGTAATCCC CCAGCAGTGG ATTGCTTTGA CCGTAAGGAG
  R
  AAGATGTTGT TACTCCTAGG TGCCTAGACT ATAGACTAGA AAGTAGAATG ACCCACTTCT
  TGTCATCCAG AGGGGTCAGA GGGAAGGAGT GGGGCACAAG TCTCATGTCA GTCATTAAGT
  ATTTTCCCAG GAATCTGTGG ACTTAAAACA AGGGGTAGAA CTTGTAGGAT GGAGCAGAAA
  TCCTTACTCA GATAATTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955903	NES10677222	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	A	A	A		G	A	A	G		A
ss135837378	ENSMUSSNP5671641	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss320946792	CHEV_3_126329546	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30519593					SNP	G	G	A	G	A	G	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955903	NES10677222	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126420277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			within coordinates
Rr584659	regulatory region 584659			714 bp distal
Rr584660	regulatory region 584660			1807 bp proximal