rs30518971 SNP Detail

Summary

• ID
  rs30518971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126404148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACAGTG GGGCTGGTGG
  GGCTTTATGT CAGACTGCAC CCAGTCACGT CGCAAGTTAA CTGCTGATTC CCGAATTATT
  TCCTCAGTTC TCTCGGTACA CATCCGGCCT TGTTGGATGG AGTTTTATCT AATCCTGTCC
  TTTTTCTGAG CAAACTTGTT GAAATTTCTC ATTGGTAGTC TCCCCTTGTT CTGTTACACA
  W
  CGGTTGTTAA TGGGGTGTGG TAGCACTTTC GTGCCTCTTA GCCCCGGTTC AATACTGCCA
  AACTCACATC ATCATCATCA TGCTCACTTT AAAATGTATT TATACACTTT CAATTTATAA
  ACTACAAATT ATGAAATGTA ATTATAAACT TTGACAGTAC TTCAGGGAGA GATTTTTAAT
  TTTTATAGAT GCATGTAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955605	NES10677954	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30518971					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955605	NES10677954	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126404148 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			1091 bp upstream
Rr584652	regulatory region 584652			1102 bp distal
Rr584653	regulatory region 584653			601 bp distal
Rr584654	regulatory region 584654			404 bp proximal
Rr584655	regulatory region 584655			978 bp proximal
Tssr35522	transcription start site region 35522			1363 bp downstream