rs30518636 SNP Detail

Summary

• ID
  rs30518636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126419250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCCATC CCCACAGTTC
  TGCTTTTAGA CTTGTAACTA AGATTTCAAT AGATGAAGTA GCAATTTCCA ATAGTTTTAG
  CATTGGTGTT ATAATTCGCG CACGTGTCTA GCACGTTGAC TTTTCATTTG AAAAACTGGA
  GCATATAGAA AACAAACTCA GCTGAAGAAG GCAGGAAAGG GGCTCAGTTT AGCCATTGAA
  R
  GGGATTTGTA TTTGCTGAGA ATGGGCTTTT AGGTTGAACC AGCCTCTAGT TCCTCTTCGA
  TGCTTCCTTT GTGGTCTTTG TGACCAGACA TTTAATGTGT CAGAGGCATC AGGGGCTCAG
  GAGTCCTTCC CTAAACACCA TGCAGCTGTC ACAGGTCAAG GAGAAATACT GAGACTCATT
  TGAAATCGCT CAGAAGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45486583	mCV23466464	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				G		G
ss46955885	NES10677213	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G		G	G	G	G		A	G	G	A		G
ss135837366	ENSMUSSNP1598813	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320946788	CHEV_3_126328519	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30518636					SNP	A	A	A	G	A	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955885	NES10677213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126419250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			279 bp upstream
Rr584659	regulatory region 584659			within coordinates