rs30517999 SNP Detail

Summary

• ID
  rs30517999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126403580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTTGCG TGACCCTGTG
  AAAAGGGACA GGACCCAGAG GTTGACAAAC TCTGATCTAG TATTTCCAGC TCTACTGGGG
  TGGAAGCCGA CCTAGAGAAT ACAGAATTGT GAGAGGGCTG TTAAGAGATA AGGCCTTTGA
  GGAAGTGCTT TAAGATCAGG AAGAGATAGC TGTACTGGCA TCAGGGCTAC TGTGCTGAGA
  R
  AAAGGGCGAA GTCCGGTACC ACCCAAGGAT GGAATGGGAA GTCTGAGCAT TCCAAATAGT
  GTAGAACGAA CTCTTCCTCC TTTAAGACCC AGCTCAGGTG GTACCTCTCC TATGATGTCA
  CCTCTCTCTA CCCAGAAGGG CCTCCCCCCT CCTTCAGTCT TTTGTCATTT GAATGGCTTG
  CTGCACATTT TCCATTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955593	NES10677942	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30517999					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955593	NES10677942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126403580 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			523 bp upstream
Rr584652	regulatory region 584652			534 bp distal
Rr584653	regulatory region 584653			33 bp distal
Rr584654	regulatory region 584654			972 bp proximal
Rr584655	regulatory region 584655			1546 bp proximal
Tssr35522	transcription start site region 35522			1931 bp downstream